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Healthcare Applications Manager

Watertown, NY · Information Technology

Salary: $95-$125,000 DOE

Lead Innovation at the Intersection of Technology and Patient Care

Are you a seasoned IT professional with a passion for healthcare transformation? We’re seeking an experienced Healthcare Applications Manager to oversee the research, implementation, and optimization of clinical and administrative applications—playing a key role in advancing patient safety, operational efficiency, and user satisfaction at our Watertown, NY facility.

In this high-impact leadership role, you will manage a dynamic team including Analysts, Clinical Informatics Specialists, Programmers, and IS Educators. Your strategic vision and hands-on experience—particularly with Meditech systems ( a plus) —will drive innovation across departments while aligning IT capabilities with organizational goals.


Key Responsibilities

  • Lead planning, implementation, training, and ongoing support for all enterprise applications.

  • Collaborate with clinical and operational leaders to identify technology needs and recommend solutions that improve workflow and care quality.

  • Supervise a multidisciplinary applications team (Analysts, Informatics, Programming, IS Education).

  • Act as a trusted business consultant across hospital departments.

  • Oversee system upgrades, integration efforts, and user adoption strategies.

  • Maintain data integrity, system security, and regulatory compliance.

  • Champion staff education initiatives and best practices in system utilization.


Qualifications

  • Bachelor’s degree in Computer Science, Information Systems, or equivalent combination of education and experience.

  • Minimum 5 years’ experience in healthcare software implementation and support, with Meditech proficiency a plus, EHR required.

  • Proven leadership in managing application teams and IT projects in clinical environments.

  • Exceptional problem-solving, organizational, and communication skills.

  • Professional demeanor with the ability to make sound judgments under pressure.

  • High integrity, confidentiality, and accountability in all aspects of the role.

  • Proficient in Microsoft Office and other standard business software.


Why Choose Watertown, NY?

Nestled in Northern New York’s scenic Thousand Islands region, Watertown offers the charm of a small town with access to outdoor adventures, historical landmarks, and a strong sense of community. Enjoy an affordable cost of living, excellent schools, and proximity to Lake Ontario and the Canadian border.


Why This Role is a Standout Opportunity

  • Lead digital transformation in a mission-driven healthcare organization.

  • Work with supportive leadership in a collaborative, forward-thinking environment.

  • Influence critical hospital initiatives and patient outcomes.

  • Enjoy stability, growth, and professional development opportunities.


Ready to Make an Impact?

If you're ready to bring your EHR expertise and leadership skills to a healthcare organization that values innovation and excellence, apply today and help shape the future of clinical care delivery.


Relevant Keyword Cloud:
Healthcare IT, Applications Manager, Clinical Informatics, Meditech, Hospital Information Systems, EMR/EHR, IT Management, Software Implementation, Healthcare Technology, Systems Integration, Information Systems, Patient Safety, Digital Health, IT Leadership


As recruiters, we are skilled in our field and understand how to match an opportunity with the individual. If you choose to send us your resume, be advised we will not share it with any employer without your permission. 

If this isn't the right position for you, please share it with someone who might be interested. In the meantime, please look at our website – we have other openings that may suit your needs!

Thank you,

Brian Hughes
https://www.greatbaystaffing.com

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